Background The interest in prognostic reviews is increasing, but to properly review existing
evidence an accurate search filer for finding prediction research is needed. The aim of this …

Searching metabolites against databases according to their masses is often the first step in
metabolite identification for a mass spectrometry-based untargeted metabolomics study. …

… Search strategy preparation is an essential part of searching databases online. The search
strategy means a way to search the topic systematically and narrowing the search output to …

Most protein complexes are inaccessible to high resolution structural analysis. We report the
results of a combined approach of cross-linking, mass spectrometry, and bioinformatics to …

Tandem mass spectrometry-based proteomics is currently in great demand of computational
methods that facilitate the elimination of likely false positives in peptide and protein …

… Here we develop and describe a framework for intelligent data acquisition and real-time
database searching and showcase selected examples. The intelligent agent is implemented in …

… database searching… database searching or minimize the variance of the number of
pattern-based matches in alignment-free sequence comparison. We show that, for database …

Mass spectrometry has become an indispensable tool for the characterization of glycosylation
across biological systems. Our ability to generate rich fragmentation of glycopeptides has …

We describe a new approach to identify proteins involved in disease pathogenesis. The
technology, Epitope-Mediated Antigen Prediction (E-MAP), leverages the specificity of patients' …

Sequence comparisons need to be performed as carefully as wet-lab procedures, in terms of
both experimental design and interpretation. The basic requirements of database searching…