Microbial Genome Assembly and Annotation in Galaxy
Bioinformatics Training Room, Cambridge University.
June 8 2017
http://tinyurl.com/cambridge-assembly-2017
Simon Gladman, Gabriella Rustici, ...
Program
Time | Topic | Workshop materials | Other resources |
9:30 - 9:45 | Welcome, Introduction and Outline | ||
9:45 - 10:45 (Including a 10 minute break at 10am) | Galaxy 101 | ||
10:45 - 12:30 | NGS Data Microbial Genome Assembly | Assembly with Velvet and Velvet Optimiser Tutorial | Velvet paper doi: 10.1101/gr.074492.10 |
12:30 - 13:30 | Lunch | ||
13:30 - 14:30 (including a 10 minute break at 14:30) | Microbial Genome Assembly (continued) | SPAdes website | |
14:30 - 16:30 | Microbial Genome Annotation | Prokka website | |
16:30 - 16:45 | Wrap up and close |
http://galaxy-mel.genome.edu.au
Other Galaxy Servers:
Links to more training material:
https://sepsis-omics.github.io/tutorials
https://galaxyproject.github.io/training-material
Thanks!
